Research Agenda
The group Medical Systems Biology focuses on the integrated analysis and modeling of high-throughput data for auto-immune disease, cancer research and precision medicine. Being at the interface of medicine, cell and computational biology, the group develops predictors of the onset and progression of disease, devrlops multi-scale dynamic mathematical models for cellular behavior from an initial stimulus to the final phenotype and integrates computational analysis with medical information for a better molecular understanding of disease.
In close collaboration with the Lübeck Institute of Experimental Dermatology and Institute for Integrative and Experimental Genomics we develop integrated Systems Biology solutions for in depth analysis of the molecular bases of disease onset, progression and therapy.
Based on the integration of multi-OMICS data with large-scale interaction maps we aim to derive common and disease specific regulatory networks, whose dynamics and feedbacks are causal for the disease phenotype.
Follow-up perturbation experiments on appropriate in vivo and in vitro models will allow to elucidate and model detailed pathway dynamics and gene regulatory programs that alter cell states and decisions on multiple time scales.
- Divisions
- Model Systems (Prof. Ludwig)
- Medical Systems Biology (Prof. Busch)
- Translation (Prof. Schmidt)
- Visualisation (Prof. Hundt)
Recent Publications
Richa Sharma, Sushree S Sahoo, Masayoshi Honda, Sophie L Granger, Charnise Goodings, Louis Sanchez, Axel Künstner, Hauke Busch, Fabian Beier, Shondra M Pruett-Miller, Marcus Valentine, Alfonso Gonzalez Fernandez, Ti-Cheng Chang, Vincent Géli, Dmitri Churikov, Sandrine Hirschi, Victor B Pastor, Melanie Boerries, Melchior Lauten, Charikleia Kelaidi, Marcin W Wlodarski, Megan Anne Cooper, Sarah K Nicholas, Jill A Rosenfeld, Sophia Polychronopoulou, Caroline Kannengiesser, Carole Saintome, Charlotte M Niemeyer, Patrick Revy, Marc S Wold, Maria Spies, Miriam Erlacher, Stéphane Coulon, Marcin W Wlodarski. Gain-of-Function Mutations in RPA1 Cause a Syndrome with Short Telomeres and Somatic Genetic Rescue. Blood (2021)
Hanno M Witte, Axel Künstner, Nadine Hertel, Heinz-Wolfram Bernd, Veronica Bernard, Stephanie Stölting, Hartmut Merz, Nikolas von Bubnoff, Hauke Busch, Alfred C Feller, and Niklas Gebauer. Integrative genomic and transcriptomic analysis in plasmablastic lymphoma identifies disruption of key regulatory pathways. Blood Adv. (2021)
Markus Niebuhr, Julia Belde, Anke Fähnrich, Arnauld Serge, Magali Irla, Christoph T Ellebrecht, Christoph M Hammers, Katja Bieber, Jürgen Westermann, and Kathrin Kalies. Receptor repertoires of murine follicular T helper cells reveal a high clonal overlap in separate lymph nodes in autoimmunity. Elife (2021)
Jutta Kirfel, Christiane Charlotte Kümpers, Anke Fähnrich, Carsten Heidel, Mladen Jokic, Ignacija Vlasic, Sebastian Marwitz, Torsten Goldmann, Helen Pasternack, Sabine Bohnet, Danny Jonigk, Mark P Kühnel, Anne Offermann, Hauke Busch, and Sven Perner. PD-L1 dependent immunogenic landscape in hot lung adenocarcinomas identified by transcriptome analysis. Cancers (Basel) (2021)
Theresa L. Montgomery, Axel Künstner, Josephine J. Kennedya Qian Fang, Lori Asarian, Rachel Culp-Hill, Angelo D’Alessandro, Cory Teuscher, Hauke Busch, and Dimitry N. Krementsov. Interactions between host genetics and gut microbiota determine susceptibility to CNS autoimmunity. PNAS (2020)
Inken Wohlers, Axel Künstner, Matthias Munz, Michael Olbrich, Anke Fähnrich, Verónica Calonga-Solís, Caixia Ma, Misa Hirose, Shaaban El-Mosallamy, Mohamed Salama, Hauke Busch, Saleh Ibrahim. An integrated personal and population-based Egyptian genome reference. Nature Communications 11, 47,19 (2020)
Mathew, Nimitha R; Baumgartner, Francis; Braun, Lukas; O'Sullivan, David; Thomas, Simone; Waterhouse, Miguel; Müller, Tony A; Hanke, Kathrin; Taromi, Sanaz; Apostolova, Petya. Sorafenib promotes graft-versus-leukemia activity in mice and humans through IL-15 production in FLT3-ITD-mutant leukemia cells. Nature medicine 24,3,282 (2018) Nature Publishing Group
Olbrich, Michael Roland; Künstner, Axel; Witte, Mareike; Busch, Hauke; Fähnrich, Anke. Genetics and Omics Analysis of Autoimmune Skin Blistering Diseases. Frontiers in immunology 10,2327 (2019)
Sánchez-González, Ismael; Bobien, Anja; Molnar, Christian; Schmid, Simone; Strotbek, Michaela; Boerries, Melanie; Busch, Hauke; Olayioye, Monilola A. miR-149 suppresses breast cancer metastasis by blocking paracrine interactions with macrophages. Cancer Research 80,6,1330-1341 (2020) American Association for Cancer Research
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